TransDecoder https://github.com/TransDecoder/TransDecoder 软件提供该脚本:
/share/work/biosoft/TransDecoder/latest/util/gff3_file_to_proteins.pl --gff3 genome.final.gff3 --fasta ../genome.fa --seqType cDNA >cdna.fa
/share/work/biosoft/TransDecoder/latest/util/gff3_file_to_proteins.pl --gff3 genome.final.gff3 --fasta ../genome.fa --seqType CDS >cds.fa
/share/work/biosoft/TransDecoder/latest/util/gff3_file_to_proteins.pl --gff3 genome.final.gff3 --fasta ../genome.fa --seqType prot >pep.fa
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