wgd syn 报错 KeyError: 6.0

KeyError: 6.0

Traceback (most recent call last):

  File "/share/work/biosoft/python/Python3/bin/wgd", line 33, in <module>

    sys.exit(load_entry_point('wgd==1.2', 'console_scripts', 'wgd')())

  File "/share/work/biosoft/python/Python-v3.9.16/lib/python3.9/site-packages/click/core.py", line 1130, in __call__

    return self.main(*args, **kwargs)

  File "/share/work/biosoft/python/Python-v3.9.16/lib/python3.9/site-packages/click/core.py", line 1055, in main

    rv = self.invoke(ctx)

  File "/share/work/biosoft/python/Python-v3.9.16/lib/python3.9/site-packages/click/core.py", line 1657, in invoke

    return _process_result(sub_ctx.command.invoke(sub_ctx))

  File "/share/work/biosoft/python/Python-v3.9.16/lib/python3.9/site-packages/click/core.py", line 1404, in invoke

    return ctx.invoke(self.callback, **ctx.params)

  File "/share/work/biosoft/python/Python-v3.9.16/lib/python3.9/site-packages/click/core.py", line 760, in invoke

    return __callback(*args, **kwargs)

  File "/share/work/biosoft/python/Python-v3.9.16/lib/python3.9/site-packages/wgd_cli.py", line 851, in syn

    syn_(

  File "/share/work/biosoft/python/Python-v3.9.16/lib/python3.9/site-packages/wgd_cli.py", line 942, in syn_

    syntenic_dotplot(

  File "/share/work/biosoft/python/Python-v3.9.16/lib/python3.9/site-packages/wgd/viz.py", line 245, in syntenic_dotplot

    x = [genomic_elements[curr_list_x] + x for x in

  File "/share/work/biosoft/python/Python-v3.9.16/lib/python3.9/site-packages/wgd/viz.py", line 245, in <listcomp>

    x = [genomic_elements[curr_list_x] + x for x in

KeyError: 6.0




wgd_cli.py程序bug,如果GFF中染色体名称全部是数字,会读成数字,导致出错attachments-2023-03-E5DpNZRJ642426f833b2b.png

  • 发表于 2023-03-29 19:19
  • 阅读 ( 1072 )
  • 分类:基因组学

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