GATK报错| this implies a problem with the file locking support in your operating system

##### ERROR MESSAGE: Timeout of 30000 milliseconds was reached while trying to acquire a lock on file raw.vcf.tmp.idx. Since the GATK uses non-blocking lock acquisition calls that...
##### ERROR MESSAGE: Timeout of 30000 milliseconds was reached while trying to acquire a lock on file raw.vcf.tmp.idx. Since the GATK uses non-blocking lock acquisition calls that are not supposed to wait, this implies a problem with the file locking support in your operating system.
##### ERROR ------------------------------------------------------------------------------------------
这个报错原因可能是不能同时调用程序里的一些文件,如果同时调用同一个文件,就会出现这个错误;
解决方法:在命令行中添加-disable_auto_index_creation_and_locking_when_reading_rods这个参数,表示禁止索引文件的自动生成和锁定;
  • 发表于 2023-07-03 10:10
  • 阅读 ( 1176 )
  • 分类:软件工具

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