在使用GATK软件的时候出现报错
命令行：
/share/work/biosoft/java/latest/bin/java -XX:ParallelGCThreads=5 -Xmx50g -Djava.io.tmpdir=/share/nas5/renzx/project/zx-20230821-248_noref_...
在使用GATK软件的时候出现报错
命令行：
/share/work/biosoft/java/latest/bin/java -XX:ParallelGCThreads=5 -Xmx50g -Djava.io.tmpdir=tmp -jar /share/work/biosoft/GATK/3.6/GenomeAnalysisTK.jar -T VariantFiltration ………………
报错：
##### ERROR ------------------------------------------------------------------------------------------
##### ERROR A USER ERROR has occurred (version 3.6-0-g89b7209):
##### ERROR
##### ERROR This means that one or more arguments or inputs in your command are incorrect.
##### ERROR The error message below tells you what is the problem.
##### ERROR
##### ERROR If the problem is an invalid argument, please check the online documentation guide
##### ERROR (or rerun your command with --help) to view allowable command-line arguments for this tool.
##### ERROR
##### ERROR Visit our website and forum for extensive documentation and answers to
##### ERROR commonly asked questions https://www.broadinstitute.org/gatk
##### ERROR
##### ERROR Please do NOT post this error to the GATK forum unless you have really tried to fix it yourself.
##### ERROR
##### ERROR MESSAGE: Invalid command line: Malformed walker argument: Could not find walker with name: VariantFiltration
##### ERROR ------------------------------------------------------------------------------------------
这个报错原因是java版本问题，我使用的是最新版本jdk-19.0.1，将它改为jdk1.8.0_161版本之后问题就解决了
