inferCNV 测试
Rscript ../infercnv.r -i ../BCC_GSE123813.qs \
-r "T_cells" --annotations_file ../cellanno_selected.tsv --gene_location ../hg38_gencode_v27.txt \
--cpu 20 --hmm --denoise --analysis_mode subclusters --cluster_by_groups
Rscript ../infercnv.r -i ../BCC_GSE123813.qs \
-r "T_cells" --annotations_file ../cellanno_selected.tsv --gene_location ../hg38_gencode_v27.txt \
--cpu 20 --hmm --denoise --analysis_mode subclusters
Rscript ../infercnv.r -i ../BCC_GSE123813.qs \
-r "T_cells" --annotations_file ../cellanno_selected.tsv --gene_location ../hg38_gencode_v27.txt \
--cpu 20 --hmm --denoise --analysis_mode samples
Rscript ../infercnv.r -i ../BCC_GSE123813.qs \
-r "T_cells" --annotations_file ../cellanno_selected.tsv --gene_location ../hg38_gencode_v27.txt \
--cpu 20 --hmm --denoise --analysis_mode samples --cluster_by_groups
Rscript ../infercnv.r -i ../BCC_GSE123813.qs \
-r "T_cells" --annotations_file ../cellanno_selected.tsv --gene_location ../hg38_gencode_v27.txt \
--cpu 20 --hmm --denoise --analysis_mode subclusters --cluster_by_groups --tumor_subcluster_partition_method random_trees
Rscript ../infercnv.r -i ../BCC_GSE123813.qs \
-r "T_cells" --annotations_file ../cellanno_selected.tsv --gene_location ../hg38_gencode_v27.txt \
--cpu 20 --hmm --denoise --analysis_mode subclusters --tumor_subcluster_partition_method random_trees
Rscript ../infercnv.r -i ../BCC_GSE123813.qs \
-r "T_cells" --annotations_file ../cellanno_selected.tsv --gene_location ../hg38_gencode_v27.txt \
--cpu 20 --hmm --denoise --analysis_mode samples --cluster_by_groups --tumor_subcluster_partition_method random_trees
Rscript ../infercnv.r -i ../BCC_GSE123813.qs \
-r "T_cells" --annotations_file ../cellanno_selected.tsv --gene_location ../hg38_gencode_v27.txt \
--cpu 20 --hmm --denoise --analysis_mode samples --tumor_subcluster_partition_method random_trees
- 发表于 3天前
- 阅读 ( 36 )
- 分类：转录组
