from RcppExports.cpp:4:
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
template<class T> T * get_pointer(std::auto_ptr<T> const& p)
^~~~~~~~
In file included from /share/work/biosoft/gcc/gcc-v6.4.0/include/c++/6.4.0/memory:81:0,
from /share/work/biosoft/R/R-v4.2.0/lib64/R/library/RProtoBufLib/include/google/protobuf/stubs/common.h:41,
from /share/work/biosoft/R/R-v4.2.0/lib64/R/library/RProtoBufLib/include/google/protobuf/io/coded_stream.h:135,
from /share/work/biosoft/R/R-v4.2.0/lib64/R/library/RProtoBufLib/include/cytolib/GatingSet.pb.h:23,
from /share/work/biosoft/R/R-v4.2.0/lib64/R/library/cytolib/include/cytolib/calibrationTable.hpp:19,
from /share/work/biosoft/R/R-v4.2.0/lib64/R/library/cytolib/include/cytolib/transformation.hpp:17,
from /share/work/biosoft/R/R-v4.2.0/lib64/R/library/cytolib/include/cytolib/compensation.hpp:15,
from pairVectorRcppWrap.h:10,
from flowCore_types.h:12,
from RcppExports.cpp:4:
/share/work/biosoft/gcc/gcc-v6.4.0/include/c++/6.4.0/bits/unique_ptr.h:49:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from /share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:29:0,
from pairVectorRcppWrap.h:13,
from flowCore_types.h:12,
from RcppExports.cpp:4:
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:68:51: error: ‘subview_cols’ in namespace ‘arma’ does not name a template type
template <typename T> SEXP wrap ( const arma::subview_cols<T>& ) ;
^~~~~~~~~~~~
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:68:63: error: expected ‘,’ or ‘...’ before ‘<’ token
template <typename T> SEXP wrap ( const arma::subview_cols<T>& ) ;
^
In file included from /share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:35:0,
from pairVectorRcppWrap.h:13,
from flowCore_types.h:12,
from RcppExports.cpp:4:
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h:57:38: error: ‘subview_cols’ in namespace ‘arma’ does not name a template type
SEXP arma_subview_wrap( const arma::subview_cols<T>& data, int nrows, int ncols ){
^~~~~~~~~~~~
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h:57:50: error: expected ‘,’ or ‘...’ before ‘<’ token
SEXP arma_subview_wrap( const arma::subview_cols<T>& data, int nrows, int ncols ){
^
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h: In function ‘SEXPREC* Rcpp::RcppArmadillo::arma_subview_wrap(int)’:
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h:59:38: error: ‘nrows’ was not declared in this scope
Rcpp::Matrix<RTYPE> mat( nrows, ncols ) ;
^~~~~
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h:59:45: error: ‘ncols’ was not declared in this scope
Rcpp::Matrix<RTYPE> mat( nrows, ncols ) ;
^~~~~
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h:61:31: error: ‘data’ was not declared in this scope
const T* svcmem = data.colptr(0);
^~~~
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h: At global scope:
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h:99:50: error: ‘subview_cols’ in namespace ‘arma’ does not name a template type
template <typename T> SEXP wrap( const arma::subview_cols<T>& data ){
^~~~~~~~~~~~
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h:99:62: error: expected ‘,’ or ‘...’ before ‘<’ token
template <typename T> SEXP wrap( const arma::subview_cols<T>& data ){
^
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h: In function ‘SEXPREC* Rcpp::wrap(int)’:
/share/work/biosoft/R/R-v4.2.0/lib64/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h:100:53: error: ‘data’ was not declared in this scope
return RcppArmadillo::arma_subview_wrap<T>( data, data.n_rows, data.n_cols ) ;
^~~~
make: *** [RcppExports.o] Error 1
ERROR: compilation failed for package ‘flowCore’
* removing ‘/share/work/biosoft/R/R-v4.2.0/lib64/R/library/flowCore’
解决：
install.packages("https://cran.r-project.org/src/contrib/Archive/RcppArmadillo/RcppArmadillo_0.9.900.3.0.tar.gz", repos=NULL, type="source")
参考：https://github.com/RcppCore/RcppArmadillo/issues/249
