试试用这个代码安装:
install.packages("Vennerable", repos="http://R-Forge.R-project.org")
安装过程如下,这里有几个依赖包,dependencies ‘graph’, ‘RBGL’, ‘reshape’ are not available 报错,单独安装一下。再安装这个Vennerable包就好了
Type 'q()' to quit R.
> local({r <- getOption("repos")
+ r["CRAN"] <- "http://mirrors.tuna.tsinghua.edu.cn/CRAN/"
+ options(repos=r)})
> install.packages("Vennerable")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Warning in install.packages :
package ‘Vennerable’ is not available (for R version 3.6.1)
> install.packages("Vennerable", repos="http://R-Forge.R-project.org")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Warning in install.packages :
dependencies ‘graph’, ‘RBGL’, ‘reshape’ are not available
installing the source package ‘Vennerable’
trying URL 'http://R-Forge.R-project.org/src/contrib/Vennerable_3.0.tar.gz'
Content type 'application/x-gzip' length 1727552 bytes (1.6 MB)
downloaded 1.6 MB
ERROR: dependencies 'graph', 'RBGL', 'reshape' are not available for package 'Vennerable'
* removing 'C:/Program Files/R/R-3.6.1/library/Vennerable'
Warning in install.packages :
installation of package ‘Vennerable’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\Administrator\AppData\Local\Temp\RtmpI5JS9I\downloaded_packages’
> library(Vennerable)
Error in library(Vennerable) : 不存在叫‘Vennerable’这个名字的程辑包
> install.packages(c('graph', 'RBGL', 'reshape'))
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Warning in install.packages :
packages ‘graph’, ‘RBGL’ are not available (for R version 3.6.1)
trying URL 'http://mirrors.tuna.tsinghua.edu.cn/CRAN/bin/windows/contrib/3.6/reshape_0.8.8.zip'
Content type 'application/zip' length 170807 bytes (166 KB)
downloaded 166 KB
package ‘reshape’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\Administrator\AppData\Local\Temp\RtmpI5JS9I\downloaded_packages
> if (!requireNamespace("BiocManager", quietly = TRUE))
+ install.packages("BiocManager")
>
> BiocManager::install("graph")
Bioconductor version 3.9 (BiocManager 1.30.4), R
3.6.1 (2019-07-05)
Installing package(s) 'graph'
trying URL 'https://bioconductor.org/packages/3.9/bioc/bin/windows/contrib/3.6/graph_1.62.0.zip'
Content type 'application/zip' length 1764880 bytes (1.7 MB)
downloaded 1.7 MB
package ‘graph’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\Administrator\AppData\Local\Temp\RtmpI5JS9I\downloaded_packages
Update old packages: 'BiocParallel', 'boot',
'xml2'
Update all/some/none? [a/s/n]:
n
> BiocManager::install("RBGL")
Bioconductor version 3.9 (BiocManager 1.30.4), R
3.6.1 (2019-07-05)
Installing package(s) 'RBGL'
trying URL 'https://bioconductor.org/packages/3.9/bioc/bin/windows/contrib/3.6/RBGL_1.60.0.zip'
Content type 'application/zip' length 3558503 bytes (3.4 MB)
downloaded 3.4 MB
package ‘RBGL’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\Administrator\AppData\Local\Temp\RtmpI5JS9I\downloaded_packages
Update old packages: 'BiocParallel', 'boot',
'xml2'
Update all/some/none? [a/s/n]:
n
> library(Vennerable)
Error in library(Vennerable) : 不存在叫‘Vennerable’这个名字的程辑包
> install.packages("Vennerable", repos="http://R-Forge.R-project.org")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
installing the source package ‘Vennerable’
trying URL 'http://R-Forge.R-project.org/src/contrib/Vennerable_3.0.tar.gz'
Content type 'application/x-gzip' length 1727552 bytes (1.6 MB)
downloaded 1.6 MB
* installing *source* package 'Vennerable' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Vennerable'
finding HTML links ... 好了
PlotDarkMatter html
PlotVennGeometry html
StemCell html
TissueDrawing-class html
Venn-class html
Venn html
VennDiagrams html
VennDrawing-class html
VennSetSetLabels html
VennThemes html
Rd warning: C:/Users/Administrator/AppData/Local/Temp/Rtmp4sXebl/R.INSTALL2da8499574a9/Vennerable/man/VennThemes.Rd:28: file link 'RColorBrewer' in package 'RColorBrewer' does not exist and so has been treated as a topic
Rd warning: C:/Users/Administrator/AppData/Local/Temp/Rtmp4sXebl/R.INSTALL2da8499574a9/Vennerable/man/VennThemes.Rd:53: file link 'RColorBrewer' in package 'RColorBrewer' does not exist and so has been treated as a topic
Vennerable-internal html
Vennerable-package html
compute.S4 html
compute.Venn html
** building package indices
** testing if installed package can be loaded from temporary location
*** arch - i386
*** arch - x64
** testing if installed package can be loaded from final location
*** arch - i386
*** arch - x64
** testing if installed package keeps a record of temporary installation path
* DONE (Vennerable)
The downloaded source packages are in
‘C:\Users\Administrator\AppData\Local\Temp\RtmpI5JS9I\downloaded_packages’
>
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