#sheep_data
library(BiocManager)
BiocManager::install('clusterProfiler')
aBiocManager::install("AnnotationHub")
BiocManager::install("biomaRt")
library(AnnotationHub)
library(biomaRt)
hub <- AnnotationHub::AnnotationHub()
query(hub, "Ovis")
sheep<-hub[["AH85595"]]
length(keys(sheep))
columns(sheep)
head(sheep)
library(clusterProfiler)
> enrich.go<-enrichGO(gene=down_gene,
+ OrgDb="sheep",
+ keyType="SYMBOL",
+ ont="All",
+ pAdjustMethod="fdr",
+ pvalueCutoff=0.05,
+ qvalueCutoff=0.2,
+ readable=FALSE)
Loading required package: sheep
Loading required package: sheep
Warning messages:
1: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘sheep’