微生物多样性分析课程镜像ampliseq-q2运行出错:there is no package called ‘BiocManager’

利用dada2生成特征表,输入命令(省略了部分选项):

qiime dada2 denoise-paired         --i-demultiplexed-seqs    $workdir/1.import_data/demux.qza   --p-n-threads 2   --p-trim-left-f 29 --p-trim-left-r 18


提示: Plugin error from dada2: An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more. Debug info has been saved to /tmp/qiime2-q2cli-err-u8wvbzh9.log


打开日志文件:

Error in library(BiocManager, quietly = TRUE) : there is no package called ‘BiocManager’ Calls: .First -> library Execution halted


问题:
是不是缺少BiocManager这个包?是镜像ampliseq-q2中缺乏呢,还是系统本身缺少,该如何解决,谢谢!

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1 个回答

omicsgene - 生物信息
擅长:重测序,遗传进化,转录组,GWAS

请用课程指定版本的镜像:docker pull omicsclass/ampliseq-q2:v1.4

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  • cashing 提出于 2021-09-19 11:01

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