检查看看前面的几步代码是否运行成功
query <- GDCquery(project = "TCGA-BRCA",
data.category = "Transcriptome Profiling",
data.type = "miRNA Expression Quantification",
workflow.type = "BCGSC miRNA Profiling"
barcode = TNBC_barcode)
GDCdownload(query,method='api',files.per.chunk = 50)
BRC_DATA1 <- GDCprepare(query)####一般到GDCprepare就齐活了
library(SummarizedExperiment)
BRC_TNBC =assay(BRC_DATA1)
报错:Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function ‘assay’ for signature ‘"data.frame", "missing"’