fastqc $datadir/*.gz -o $workdir/1.fastqc 报错

Exception in thread "Thread-3" java.lang.OutOfMemoryError: GC overhead limit exceeded

at java.lang.String.toCharArray(String.java:2899)

at uk.ac.babraham.FastQC.Modules.BasicStats.processSequence(BasicStats.java:123)

at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:89)

at java.lang.Thread.run(Thread.java:745)

默认排序时间排序

1 个回答

omicsgene - 生物信息 2022-07-27 10:36

擅长：重测序,遗传进化,转录组,GWAS

内存不够吧，如果在windows里面使用dockers： https://www.omicsclass.com/article/1413