TCGA数据中如何区分样本是癌症还是癌旁?

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microRNA

这个需要了解一下TCGA的样品编码方式(barcode):

barcode.png
其中sample 指示的位置,标记了不同的样品类型,具体如下表所示:

01  Primary Solid Tumor  TP(实体瘤)
02                      Recurrent Solid Tumor  TR
03Primary Blood Derived Cancer - Peripheral Blood  TB (血液相关癌)
04Recurrent Blood Derived Cancer - Bone Marrow  TRBM
05Additional - New Primary  TAP
06Metastatic  TM
07Additional Metastatic  TAM
08Human Tumor Original Cells  THOC
09Primary Blood Derived Cancer - Bone Marrow  TBM
10Blood Derived Normal  NB (血液癌,正常)
11Solid Tissue Normal  NT(实体瘤,正常)
12Buccal Cell Normal  NBC
13EBV Immortalized Normal  NEBV
14Bone Marrow Normal  NBM
15sample type 15  15SH
16sample type 16  16SH
20Control Analyte  CELLC
40Recurrent Blood Derived Cancer - Peripheral Blood  TRB
50Cell Lines  CELL
60Primary Xenograft Tissue  XP
61Cell Line Derived Xenograft Tissue    XCL
99sample type 99  99SH
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