请问为什么GWAS用tassel mlm模型画的manhattan图什么都没有呢也没有报错能生成一个什么都没有的图片只有坐标和题

../../script/gwas_manhattan_plot.r -i mlm_pvalue.txt -F msu7.0_bowtie2.fa.fai -T Grains_per_panicle -n grains_per_panicle_manhattan -c 1.3e-6

--> Q&A for bioinformatics, please visit the website: www.omicsclass.com

--> Recommended to learn R language:

--> https://study.163.com/course/introduction/1209073807.htm?share=1&shareId=1030291076

Loading required package: ggplot2

input chromosome name: chr01 chr02 chr03 chr04 chr05 chr06 chr07 chr08 chr09 chr10 chr11 chr12

fa index chr name: Chr1 Chr2 Chr3 Chr4 Chr5 Chr6 Chr7 Chr8 Chr9 Chr10 Chr11 Chr12

null device

默认排序时间排序

1 个回答

Wang J 2022-11-11 19:05

已解决，index的CHR写法和我文件中不同。