PASA update 报错

老师您好,请问基因组注释在运行 PASA update 这步时,一直报如下错误,请问老师该如何解决

DBD::mysql::db do failed: Data too long for column 'model_id' at row 1 at /share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/PerlLib/DB_connect.pm line 223.Thread 4 terminated abnormally: failed query: <insert into annotation_updates (gene_id, model_id, alt_splice_flag, before_gene_obj, after_gene_obj, compare_id, is_valid, have_before, have_after, is_novel_flag) values (?,?,?,?,?,?,?,?,?,?)> values: evm.TU.Chr04.1545 evm.TU.Chr04.1547 evm.TU.Chr04.1548 evm.TU.Chr04.1533 evm.TU.Chr04.1535 evm.TU.Chr04.1536 evm.TU.Chr04.1537 evm.TU.Chr04.1550 evm.TU.Chr04.1551 evm.TU.Chr04.1553 evm.TU.Chr04.1555 evm.TU.Chr04.1556 evm.TU.Chr04.1559 evm.model.Chr04.1545 evm.model.Chr04.1547 evm.model.Chr04.1548 evm.model.Chr04.1533 evm.model.Chr04.1535 evm.model.Chr04.1536 evm.model.Chr04.1537 evm.model.Chr04.1550 evm.model.Chr04.1551 evm.model.Chr04.1553 evm.model.Chr04.1555 evm.model.Chr04.1556 evm.model.Chr04.1559 0

Errors: Data too long for column 'model_id' at row 1 at /share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/PerlLib/DB_connect.pm line 235 thread 6.

        DB_connect::RunMod(DB_connect=HASH(0x963c690), "insert into annotation_updates (gene_id, model_id, alt_splice"..., "evm.TU.Chr06.2919 evm.TU.Chr06.2923 evm.TU.Chr06.2924 evm.TU."..., "evm.model.Chr06.2919 evm.model.Chr06.2923 evm.model.Chr06.292"..., 0, undef, "\x{5}\x{a}\x{11}\x{8}Gene_obj\x{3}\x{0}\x{0}\x{0}2\x{a}\x{ec}MALSLSTIFSPKTSRPPVATTSKTPIPVFVSYSTTNRRGPAN"..., 1, ...) called at /share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/scripts/cDNA_annotation_comparer.dbi line 1274 thread 6



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1 个回答

omicsgene - 生物信息
擅长:重测序,遗传进化,转录组,GWAS

这几个基因 结构有问题吧,你看看的结果,不行就手动删除吧

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  • 提出于 2023-09-01 17:15

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