基因组注释 ,seqclean软件报错

老师您好,在做基因组注释时,PASA_assembly中,seqclean报错,使用的是docker的镜像,已添加export USER='me'  

报错信息如下:

/work/zhushi/04.PASA_assembly/UniVec

seqclean running options: 

seqclean all_transcripts.fasta -c 10 -n 10000 -v ./UniVec

 Standard log file: seqcl_all_transcripts.fasta.log

 Error log file:    err_seqcl_all_transcripts.fasta.log

 Using 10 CPUs for cleaning

-= Rebuilding all_transcripts.fasta cdb index =-

 Launching actual cleaning process:

 psx -p 10  -n 10000  -i all_transcripts.fasta -d cleaning -C '/work/zhushi/04.PASA_assembly/all_transcripts.fasta:ANLMS100:/work/zhushi/04.PASA_assembly/UniVec::11:0' -c '/share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/bin/seqclean.psx'

Error at 'psx -p 10  -n 10000  -i all_transcripts.fasta -d cleaning -C '/work/zhushi/04.PASA_assembly/all_transcripts.fasta:ANLMS100:/work/zhushi/04.PASA_assembly/UniVec::11:0' -c '/share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/bin/seqclean.psx''



Process terminated with an error!

seqclean (all_transcripts.fasta) encountered an error.

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  • 提出于 2023-10-27 13:24

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