老师您好,在做基因组注释时,PASA_assembly中,seqclean报错,使用的是docker的镜像,已添加export USER='me'
报错信息如下:
/work/zhushi/04.PASA_assembly/UniVec
seqclean running options:
seqclean all_transcripts.fasta -c 10 -n 10000 -v ./UniVec
Standard log file: seqcl_all_transcripts.fasta.log
Error log file: err_seqcl_all_transcripts.fasta.log
Using 10 CPUs for cleaning
-= Rebuilding all_transcripts.fasta cdb index =-
Launching actual cleaning process:
psx -p 10 -n 10000 -i all_transcripts.fasta -d cleaning -C '/work/zhushi/04.PASA_assembly/all_transcripts.fasta:ANLMS100:/work/zhushi/04.PASA_assembly/UniVec::11:0' -c '/share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/bin/seqclean.psx'
Error at 'psx -p 10 -n 10000 -i all_transcripts.fasta -d cleaning -C '/work/zhushi/04.PASA_assembly/all_transcripts.fasta:ANLMS100:/work/zhushi/04.PASA_assembly/UniVec::11:0' -c '/share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/bin/seqclean.psx''
Process terminated with an error!
seqclean (all_transcripts.fasta) encountered an error.