/public/singularity exec /public/reseq.sif 

for i in FP180000114BR_L01_142 FP180000114BR_L01_143 FP180000114BR_L01_144 FP180000114BR_L01_146 FP180000114BR_L01_147 FP180000114BR_L01_148; do 

echo "RUN CMD: fastp --thread 30 --qualified_quality_phred 10 \

    --unqualified_percent_limit 50 \

    --n_base_limit 10 \

    -i $datadir/${i}_1.fq.gz \

    -I $datadir/${i}_2.fq.gz \

    -o ${i}_1.clean.fq.gz \

    -O ${i}_2.clean.fq.gz \

    --detect_adapter_for_pe \

    -h ${i}.html -j ${i}.json"

fastp --thread 30 --qualified_quality_phred 10 \

    --unqualified_percent_limit 50 \

    --n_base_limit 10 \

    -i $datadir/${i}_1.fq.gz \

    -I $datadir/${i}_2.fq.gz \

    -o ${i}_1.clean.fq.gz \

    -O ${i}_2.clean.fq.gz \

    --detect_adapter_for_pe \

    -h ${i}.html -j ${i}.json    

done