最后 killed 内存不够导致系统杀死任务,如果用的docker可以看看这里设置容器内存:https://www.omicsclass.com/article/1413
Rscript ./gapit_gwas.r -i ../00.filter/hapmap.txt.gz -t ../trait.tsv -m GLM -n hd.GLM.GWAS.Results
WARNING: ignoring environment value of R_HOME
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Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
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anyDuplicated, aperm, append, as.data.frame, basename, cbind,
colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
table, tapply, union, unique, unsplit, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: ‘gplots’
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Loading required package: combinat
Attaching package: ‘combinat’
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Loading required package: gdata
Registered S3 method overwritten by 'gdata':
method from
reorder.factor gplots
Attaching package: ‘gdata’
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Loading required package: gtools
Loading required package: MASS
Loading required package: mvtnorm
NOTE: THIS PACKAGE IS NOW OBSOLETE.
The R-Genetics project has developed an set of enhanced genetics
packages to replace 'genetics'. Please visit the project homepage
at http://rgenetics.org for informtion.
Attaching package: ‘genetics’
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Loading required package: LDheatmap
Loading required package: ape
Loading required package: grid
Loading required package: bigmemory
Loading required package: EMMREML
Loading required package: Matrix
Loading required package: lme4
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