换一种安装方法:
git clone https://github.com/velocyto-team/velocyto.py.git cd velocyto.py python3 setup.py install
如果有包包错没有,可以直接用pip安装:
pip3 install Cython pysam loompy
Looking in indexes: https://pypi.tuna.tsinghua.edu.cn/simple
Obtaining file:///home/biosoft/velocyto.py
Installing build dependencies ... done
Checking if build backend supports build_editable ... done
Getting requirements to build editable ... error
error: subprocess-exited-with-error
× Getting requirements to build editable did not run successfully.
│ exit code: 1
╰─> [19 lines of output]
Traceback (most recent call last):
File "/share/work/biosoft/python/latest/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
main()
File "/share/work/biosoft/python/latest/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/share/work/biosoft/python/latest/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 132, in get_requires_for_build_editable
return hook(config_settings)
File "/tmp/pip-build-env-fyxtx39r/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 448, in get_requires_for_build_editable
return self.get_requires_for_build_wheel(config_settings)
File "/tmp/pip-build-env-fyxtx39r/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 325, in get_requires_for_build_wheel
return self._get_build_requires(config_settings, requirements=['wheel'])
File "/tmp/pip-build-env-fyxtx39r/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 295, in _get_build_requires
self.run_setup()
File "/tmp/pip-build-env-fyxtx39r/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 487, in run_setup
super().run_setup(setup_script=setup_script)
File "/tmp/pip-build-env-fyxtx39r/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 311, in run_setup
exec(code, locals())
File "<string>", line 3, in <module>
ModuleNotFoundError: No module named 'numpy'
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× Getting requirements to build editable did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.