NOTICE: Running with system command <coding_change.pl  /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//5.var_ann/indel.refGene.exonic_variant_function.orig /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//ref/unknown_refGene.txt /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//ref/unknown_refGeneMrna.fa -alltranscript -out /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//5.var_ann/indel.refGene.fa -newevf /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//5.var_ann/indel.refGene.exonic_variant_function>

Error: invalid record found in exonic_variant_function file (exonic format error): <line39frameshift 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at /share/work/biosoft/annovar/latest/coding_change.pl line 77, <EVF> line 1.

Error running system command: <coding_change.pl  /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//5.var_ann/indel.refGene.exonic_variant_function.orig /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//ref/unknown_refGene.txt /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//ref/unknown_refGeneMrna.fa -alltranscript -out /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//5.var_ann/indel.refGene.fa -newevf /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//5.var_ann/indel.refGene.exonic_variant_function>

Error running system command: </share/work/biosoft/annovar/latest/table_annovar.pl /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//5.var_ann/indel.avinput /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//ref -buildver unknown -outfile /public/home/majieyu/perl5/ppgwas/reseq/reseq_demo//5.var_ann/indel -remove -protocol refGene -operation g -nastring . -otherinfo>

INFO:    Cleaning up image...