文件路径报错,上一步这个文件没有生成吧,你检查检查的;pop.bin.12
for chr in {1..12};do
echo "snpbinner visualize --out bin.visualize.$chr --crosspoints pop.crosspoints.$chr --snps pop.forbin.$chr --bins pop.bin.$chr"
done >view.sh
ParaFly -c view.sh -CPU 5
该步一直运行不出结果,demo中01.PrepareData的bin.visualize.1-12文件夹为空,部分错误代码如下:
IOError: [Errno 2] No such file or directory: 'pop.bin.12'
warning, cmd: snpbinner visualize --out bin.visualize.12 --crosspoints pop.crosspoints.12 --snps pop.forbin.12 --bins pop.bin.12 failed with ret: 256, going to retry.
warning, cmd: snpbinner visualize --out bin.visualize.11 --crosspoints pop.crosspoints.11 --snps pop.forbin.11 --bins pop.bin.11 failed with ret: 256, going to retry.
Traceback (most recent call last):
File "/share/work/biosoft/python/Python2/bin/snpbinner", line 8, in <module>
sys.exit(main())
File "/share/work/biosoft/python/Python2/lib/python2.7/site-packages/snpbinner/__main__.py", line 24, in main
program_run_dict[program_to_run](**arg_dict_to_pass)
File "/share/work/biosoft/python/Python2/lib/python2.7/site-packages/snpbinner/visualize.py", line 51, in visualize
with open(file_path) as bin_file:
IOError: [Errno 2] No such file or directory: 'pop.bin.11'
warning, cmd: snpbinner visualize --out bin.visualize.11 --crosspoints pop.crosspoints.11 --snps pop.forbin.11 --bins pop.bin.11 failed with ret: 256, going to retry.
We are sorry, commands in file: [FailedCommands] failed. :-(
麻烦老师抽空看看,谢谢老师