遗传图谱构建

for chr in  {1..12};do

 echo "snpbinner visualize --out bin.visualize.$chr --crosspoints pop.crosspoints.$chr  --snps pop.forbin.$chr --bins  pop.bin.$chr"

done >view.sh


ParaFly -c view.sh -CPU 5


该步一直运行不出结果,demo中01.PrepareData的bin.visualize.1-12文件夹为空,部分错误代码如下:


IOError: [Errno 2] No such file or directory: 'pop.bin.12'

warning, cmd: snpbinner visualize --out bin.visualize.12 --crosspoints pop.crosspoints.12  --snps pop.forbin.12 --bins  pop.bin.12 failed with ret: 256, going to retry.

warning, cmd: snpbinner visualize --out bin.visualize.11 --crosspoints pop.crosspoints.11  --snps pop.forbin.11 --bins  pop.bin.11 failed with ret: 256, going to retry.

Traceback (most recent call last):

  File "/share/work/biosoft/python/Python2/bin/snpbinner", line 8, in <module>

    sys.exit(main())

  File "/share/work/biosoft/python/Python2/lib/python2.7/site-packages/snpbinner/__main__.py", line 24, in main

    program_run_dict[program_to_run](**arg_dict_to_pass)

  File "/share/work/biosoft/python/Python2/lib/python2.7/site-packages/snpbinner/visualize.py", line 51, in visualize

    with open(file_path) as bin_file:

IOError: [Errno 2] No such file or directory: 'pop.bin.11'

warning, cmd: snpbinner visualize --out bin.visualize.11 --crosspoints pop.crosspoints.11  --snps pop.forbin.11 --bins  pop.bin.11 failed with ret: 256, going to retry.



We are sorry, commands in file: [FailedCommands] failed.  :-(


麻烦老师抽空看看,谢谢老师

请先 登录 后评论

2 个回答

omicsgene - 生物信息
擅长:重测序,遗传进化,转录组,GWAS

文件路径报错,上一步这个文件没有生成吧,你检查检查的;pop.bin.12

请先 登录 后评论
Chen jie yang xi rêve

正确顺序如图attachments-2024-10-tbIHoryS671f9630ee902.jpg

请先 登录 后评论

相似问题