请在docker镜像里面分析数据,按照课程里面的;软件在docker镜像里面;
docker课程建议看一下:点击学习:https://bdtcd.xetlk.com/s/3Rcvt0
如果购买了我们课程docker镜像可以找客服索取:这里:点击联系客服
在你们服务器上运行xpclr 软件的时候,找不到这个软件,相关的镜像已经下载。
[us002@omicsclass-a02 12:28:18 ~/work/pop_cucu_demo/05.select_sweep/xpclr]$cd $workdir/05.select_sweep
mkdir xpclr
cd xpclr
## xpclr软件每次只能运行1个染色体
## 原始的XPCLR分析:https://www.omicsclass.com/article/1334
#python 版本的xpclr,结果说明见: https://github.com/hardingnj/xpclr
for i in Chr1 Chr2 Chr3 Chr4 Chr5 Chr6 Chr7;do #不同的染色体分别计算
xpclr --format vcf --input $workdir/00.filter/clean.vcf.gz \
--samplesA ../wild_popid.txt --samplesB ../cultivated_popid.txt \
--out ./$i.xpclr --chr $i \
--size $window --step $step --maxsnps 200 --minsnps 5
done
mkdir: cannot create directory ‘xpclr’: File exists
-bash: xpclr: command not found
-bash: xpclr: command not found
-bash: xpclr: command not found
-bash: xpclr: command not found
-bash: xpclr: command not found
-bash: xpclr: command not found
-bash: xpclr: command not found
[us002@omicsclass-a02 12:28:21 ~/work/pop_cucu_demo/05.select_sweep/xpclr]$docker images
REPOSITORY TAG IMAGE ID CREATED SIZE
localhost/omicsclass/pop-evol-gwas v2.0 efcdf45e89d0 7 months ago 8.34 GB
localhost/omicsclass/reseq v2.0 1d6dd5e4e859 11 months ago 14 GB
localhost/omicsclass/bsaseq v1.0 d9592d14c885 3 years ago 4.21 GB
[us002@omicsclass-a02 12:28:46 ~/work/pop_cucu_demo/05.select_sweep/xpclr]$docker run
Error: requires at least 1 arg(s), only received 0
[us002@omicsclass-a02 12:33:43 ~/work/pop_cucu_demo/05.select_sweep/xpclr]$
请在docker镜像里面分析数据,按照课程里面的;软件在docker镜像里面;
docker课程建议看一下:点击学习:https://bdtcd.xetlk.com/s/3Rcvt0
如果购买了我们课程docker镜像可以找客服索取:这里:点击联系客服
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