这个你得具体看文章的计算方法,这里查阅了一篇文献计算方法如下,他是用KaKs_Calculator计算,但是没有直接用KaKs_Calculator里面的分离时间:
我用这篇文章的算法计算了一下的确是这样:
但是,至于KaKs_Calculator结果里面的Divergence-Time列是怎么个单位尺度,我这里还么有查到具体结果。
关键参数r,突变速率的设置,可参考以上文章计算;
参考文献如下:
https://academic.oup.com/gbe/article/8/2/302/2574013
其他物种突变速率查询的相关文献:
[1] Wolfe K H, Li W H, Sharp P M. Rates ofnucleotide substitution vary greatly among plant mitochondrial, chloroplast,and nuclear DNAs[J]. Proceedings of the National Academy of Sciences, 1987,84(24): 9054-9058.
[2] Gaut B S, Morton B R, McCaig B C, et al.Substitution rate comparisons between grasses and palms: synonymous ratedifferences at the nuclear gene Adh parallel rate differences at the plastidgene rbcL[J]. Proceedings of the National Academy of Sciences, 1996, 93(19):10274-10279.
[3] Koch M A, Haubold B, Mitchell-Olds T. Comparativeevolutionary analysis of chalcone synthase and alcohol dehydrogenase loci inArabidopsis, Arabis, and related genera (Brassicaceae)[J]. Molecular biologyand evolution, 2000, 17(10): 1483-1498.