80 Blast2go本地化过程中,运行官方文件b2g4pipe_v2.5.zip中“runPipeExample.sh“报错“The host did not accept the connection within timeout of 60000 ms;”

按着教程“http://blog.shenwei.me/local-blast2go-installation/”对blast2go本地化过程中,数据库已经完整导入,然而运行官方软件“sh runPipeExample.sh”时报错“The host did not accept the connection within timeout of 60000 ms;”,请问如何解决,希望详细点。

Prepare data for GoSlim.
8 Sequences send to preform GoSlim: goslim_generic.obo
Error while generating GoSlim results: Error: The host did not accept the connection within timeout of 60000 ms; nested exception is: 
	org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms; nested exception is: 
	org.apache.axis2.AxisFault: The host did not accept the connection within timeout of 60000 ms; nested exception is: 
	org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms


Graph-Layout-Webservice has problems or is not avalible from:
http://188.138.116.14/b2gws_axis2
Details: The host did not accept the connection within timeout of 60000 ms; nested exception is: 
	org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms; nested exception is: 
	org.apache.axis2.AxisFault: The host did not accept the connection within timeout of 60000 ms; nested exception is: 
	org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms

Started to generate a combined annotated graph: molecular_function
Creating list of GO term...
Construct graph...
Number of nodes: 63 for molecular_function
Mark annotations ...
Set graph distances ...
Filter (thin-out) graph  ...
Number of nodes: 62 for molecular_function
Graph construction finished ...
Save Graph
Calculate graph layout
Generating DOT file
Generating DOT file
Graph Layout: GONAMEANDID
Graph Layout: GONAMEANDID
false
Graph-Layout-Webservice has problems or is not avalible from:
http://188.138.116.14/b2gws_axis2
Details: The host did not accept the connection within timeout of 60000 ms; nested exception is: 
	org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms; nested exception is: 
	org.apache.axis2.AxisFault: The host did not accept the connection within timeout of 60000 ms; nested exception is: 
	org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms

Started to generate a combined annotated graph: cellular_component
Creating list of GO term...
Construct graph...
Number of nodes: 28 for cellular_component
Mark annotations ...
Set graph distances ...
Filter (thin-out) graph  ...
Number of nodes: 27 for cellular_component
Graph construction finished ...
Save Graph
Calculate graph layout
Generating DOT file
Generating DOT file
Graph Layout: GONAMEANDID
Graph Layout: GONAMEANDID
false
Graph-Layout-Webservice has problems or is not avalible from:
http://188.138.116.14/b2gws_axis2
Details: The host did not accept the connection within timeout of 60000 ms; nested exception is: 
	org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms; nested exception is: 
	org.apache.axis2.AxisFault: The host did not accept the connection within timeout of 60000 ms; nested exception is: 
	org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms



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1 个回答

omicsgene - 生物信息
擅长:重测序,遗传进化,转录组,GWAS

blast2GO 本地安装比较麻烦,还涉及mysql数据库设置,出现错误也是很复杂,光看错误不好知道原因,建议先谷歌搜索一下吧;

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