blast2GO 本地安装比较麻烦,还涉及mysql数据库设置,出现错误也是很复杂,光看错误不好知道原因,建议先谷歌搜索一下吧;
按着教程“http://blog.shenwei.me/local-blast2go-installation/”对blast2go本地化过程中,数据库已经完整导入,然而运行官方软件“sh runPipeExample.sh”时报错“The host did not accept the connection within timeout of 60000 ms;”,请问如何解决,希望详细点。
Prepare data for GoSlim. 8 Sequences send to preform GoSlim: goslim_generic.obo Error while generating GoSlim results: Error: The host did not accept the connection within timeout of 60000 ms; nested exception is: org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms; nested exception is: org.apache.axis2.AxisFault: The host did not accept the connection within timeout of 60000 ms; nested exception is: org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms Graph-Layout-Webservice has problems or is not avalible from: http://188.138.116.14/b2gws_axis2 Details: The host did not accept the connection within timeout of 60000 ms; nested exception is: org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms; nested exception is: org.apache.axis2.AxisFault: The host did not accept the connection within timeout of 60000 ms; nested exception is: org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms Started to generate a combined annotated graph: molecular_function Creating list of GO term... Construct graph... Number of nodes: 63 for molecular_function Mark annotations ... Set graph distances ... Filter (thin-out) graph ... Number of nodes: 62 for molecular_function Graph construction finished ... Save Graph Calculate graph layout Generating DOT file Generating DOT file Graph Layout: GONAMEANDID Graph Layout: GONAMEANDID false Graph-Layout-Webservice has problems or is not avalible from: http://188.138.116.14/b2gws_axis2 Details: The host did not accept the connection within timeout of 60000 ms; nested exception is: org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms; nested exception is: org.apache.axis2.AxisFault: The host did not accept the connection within timeout of 60000 ms; nested exception is: org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms Started to generate a combined annotated graph: cellular_component Creating list of GO term... Construct graph... Number of nodes: 28 for cellular_component Mark annotations ... Set graph distances ... Filter (thin-out) graph ... Number of nodes: 27 for cellular_component Graph construction finished ... Save Graph Calculate graph layout Generating DOT file Generating DOT file Graph Layout: GONAMEANDID Graph Layout: GONAMEANDID false Graph-Layout-Webservice has problems or is not avalible from: http://188.138.116.14/b2gws_axis2 Details: The host did not accept the connection within timeout of 60000 ms; nested exception is: org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms; nested exception is: org.apache.axis2.AxisFault: The host did not accept the connection within timeout of 60000 ms; nested exception is: org.apache.commons.httpclient.ConnectTimeoutException: The host did not accept the connection within timeout of 60000 ms