查看你的 染色体文件里面的第三列染色体ID与其他输入文件里面的染色体ID是否一致;
这里也有相同的问题:
解决办法:
绘制circos图,途中不显示共线性基因
绘制命令:
manager@bl8vbox[cir] /biosoft/circos/circos-0.69-6/bin/circos -conf /home/manager/GeneFA/sharegb/cir/config1.txt -outputdir /home/manager/GeneFA/sharegb/cir/result1 -outputfile test1
debuggroup summary 0.94s welcome to circos v0.69-6 31 July 2017 on Perl 5.018002
debuggroup summary 0.97s current working directory /home/manager/GeneFA/sharegb/cir
debuggroup summary 0.97s command /biosoft/circos/circos-0.69-6/bin/circos -conf /home/manager/GeneFA/sharegb/cir/config1.txt -outputdir /home/manager/GeneFA/sharegb/cir/result1 -outputfile test1
debuggroup summary 0.97s loading configuration from file /home/manager/GeneFA/sharegb/cir/config1.txt
debuggroup summary 0.99s found conf file /home/manager/GeneFA/sharegb/cir/config1.txt
debuggroup summary 1.76s debug will appear for these features: output,summary
debuggroup summary 1.76s bitmap output image /home/manager/GeneFA/sharegb/cir/result1/test1.png
debuggroup summary 1.76s SVG output image /home/manager/GeneFA/sharegb/cir/result1/test1.svg
debuggroup summary 1.77s parsing karyotype and organizing ideograms
debuggroup summary 1.83s karyotype has 26 chromosomes of total size 2,133,349,881
debuggroup summary 1.87s applying global and local scaling
debuggroup summary 1.98s allocating image, colors and brushes
debuggroup summary 10.60s drawing 26 ideograms of total size 2,133,349,881
debuggroup summary 10.60s drawing highlights and ideograms
debuggroup summary 12.78s found conf file /biosoft/circos/circos-0.69-6/bin/../etc/tracks/link.conf
debuggroup summary 12.79s found conf file /biosoft/circos/circos-0.69-6/bin/../etc/tracks/link.conf
debuggroup summary 12.79s process track_0 link /home/manager/GeneFA/sharegb/cir/link.txt
debuggroup summary 12.82s process track_1 link /home/manager/GeneFA/sharegb/cir/genome.txt
debuggroup summary 13.02s drawing link track_1 z 15
debuggroup summary 13.02s drawing link track_0 z 20
debuggroup summary 13.03s found conf file /biosoft/circos/circos-0.69-6/bin/../etc/tracks/text.conf
debuggroup summary 13.04s processing track_0 text /home/manager/GeneFA/sharegb/cir/text.txt
debuggroup summary 13.07s drawing track_0 text z 0 text.txt
debuggroup summary 13.07s placing text track /home/manager/GeneFA/sharegb/cir/text.txt
debuggroup summary 13.07s ... see progress with -debug_group text
debuggroup summary 13.07s ... see placement summary with -debug_group textplace
debuggroup summary 13.41s found conf file /biosoft/circos/circos-0.69-6/bin/../etc/tracks/axis.conf
debuggroup output 13.46s generating output
debuggroup output 14.71s created PNG image /home/manager/GeneFA/sharegb/cir/result1/test1.png (451 kb)
debuggroup output 14.72s created SVG image /home/manager/GeneFA/sharegb/cir/result1/test1.svg (93 kb)
绘制结果:
查找不出是哪里出问题了,麻烦哪位老师解决一下!