基因组比对

老师,您好,我有个问题想要请教您,就是关于基因组之间的比对,如拟南芥,葡萄,毛果杨等物种之间进行orthMCL然后比对,得到一个VN图,找到一些比如毛果杨特有的基因,我应该去报学那个课程呀?或者有没有相关的课程呀?

We analysed gene families shared between ash and 10 other species (Supplementary Table 10). In total, 279,603 proteins (77.14% of the input sequences) clustered into 27,222 groups, of which 4,292 contained sequences from all species, 3,266 were angiosperm-specific and 462 Eudicot-specific. Patterns of gene-family sharing among asterids and among woody species are shown in Fig. 1b, c. For 38,852 ash proteins, 30,802 clustered into 14,099 groups, of which 643 were ash-specific, containing 1,554 proteins. There were also 8,050 singleton proteins unique to ash. Of the 9,604 ash-specific proteins, 6,405 matched at least one InterPro signature. The 20 largest groups in ash are listed in Extended Data Table 1: several are putatively associated with disease resistance.

我们分析了白蜡和其他10个物种之间共享的基因家族(补充表10)。总共279,603个蛋白质(占输入序列的77.14%)聚类为27,222个组,其中4,292个组包含来自所有物种的序列,3,266个组是被子植物特异性的,462个组是双子叶植物特异性的。图1bc显示了草本和木本物种之间的基因家族共享模式。38 852个白蜡蛋白中,有30 802个聚成14099组,其中643个是白蜡特异性的,包含1554个蛋白。还有8050个白蜡特有的单体蛋白。在9,604个白蜡特异性蛋白中,有6,405个蛋白至少与一个InterPro构象相匹配。白蜡中最大的20个群体列在扩展数据表1中:有几个被认为与抗病性有关。

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  • Jackeylove 提出于 2020-08-22 10:04

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