合并选择区域时出现错误，请教一下，要怎么解决呢？是不是把前面的- 删掉

[root@c2d1f4f23ca0 09:47:04 /work/3.map/vcf]# sed '1d' *.selected.region.txt | bedtools merge -i - >fst_top0.5_selected_region.txt

Error: Sorted input specified, but the file - has the following out of order record

hic_scaffold_13100014100002.170817908590890.004903580.00525442 -0.0996961085700556FS_D selected region

默认排序时间排序

2 个回答

omicsgene - 生物信息 2023-11-08 10:23

擅长：重测序,遗传进化,转录组,GWAS

没有排序吧，试试下面的命令

sed '1d' *.selected.region.txt |sort -k1 -k2n| bedtools merge -i - >fst_top0.5_selected_region.txt

红红火火 2023-11-08 10:35

sed '1d' *.selected.region.txt |sort -k1 -k2n| bedtools merge -i - >fst_top0.5_selected_region.txt

Error: Sorted input specified, but the file - has the following out of order record

hic_scaffold_100311000002.363965291583930.0008481630.00186525-1.13695555453789FS_F selected region

老师，又出现了这样的错误