你输入的数据有问题,染色体太多了太多了,绘制不了,有些scaffold就不要放进去绘制了;
老师您好,我在基因家族分析使用命令进行绘图时发现运行错误,错误代码如下,请您帮我查看一下,谢谢老师。
*** CIRCOS ERROR ***
cwd: /work/my_gene_family/09.circos
command: /share/work/biosoft/circos/latest/bin/circos -conf config.txt
-outputdir ./ -outputfile HSP90
You have asked to draw [1190] ideograms, but the maximum is currently set at
[200]. To increase this number change max_ideograms in etc/housekeeping.conf.
Keep in mind that drawing that many ideograms may create an image that is too
busy and uninterpretable.
If you are having trouble debugging this error, first read the best practices
tutorial for helpful tips that address many common problems
http://www.circos.ca/documentation/tutorials/reference/best_practices
The debugging facility is helpful to figure out what's happening under the
hood
http://www.circos.ca/documentation/tutorials/configuration/debugging
If you're still stumped, get support in the Circos Google Group.
http://groups.google.com/group/circos-data-visualization
Please include this error, all your configuration, data files and the version
of Circos you're running (circos -v). Do not email me directly -- please use
the group.
Stack trace:
at /share/work/biosoft/circos/circos-0.69-9/bin/../lib/Circos/Error.pm line 425, <F> line 1190.
Circos::Error::fatal_error("ideogram", "max_number", 1190, 200) called at /share/work/biosoft/circos/circos-0.69-9/bin/../lib/Circos.pm line 342
Circos::run("Circos", "outputdir", "./", "outputfile", "HSP90", "configfile", "config.txt", "_cwd", ...) called at /share/work/biosoft/circos/latest/bin/circos line 536