VCFtools - UNKNOWN
(C) Adam Auton and Anthony Marcketta 2009
Parameters as interpreted:
--gzvcf LP.vcf
--recode-INFO-all
--maf 0.05
--max-alleles 2
--maxDP 1e+03
--min-alleles 2
--minDP 2
--minGQ 0
--minQ 30
--max-missing 0.8
--recode
--remove-indels
--stdout
Using zlib version: 1.2.7
Warning: Expected at least 2 parts in FORMAT entry: ID=PL,Number=.,Type=Float,Description="Normalized, Phred-scaled likelihoods for AA,AB,BB genotypes where A=ref and B=alt; not applicable if site is not biallelic">
Warning: Expected at least 2 parts in FORMAT entry: ID=PL,Number=.,Type=Float,Description="Normalized, Phred-scaled likelihoods for AA,AB,BB genotypes where A=ref and B=alt; not applicable if site is not biallelic">
After filtering, kept 258 out of 258 Individuals
Outputting VCF file...
After filtering, kept 0 out of a possible 105046 Sites
No data left for analysis!
Run Time = 0.00 seconds
