gatk VariantFiltration : --filter-expression 显示 Input /work/my_reseq/4.snp_indel/var_qc2/BSA_no_filter.vcf must support random access to enable queries by interval. If it's a file, please index it using the bundled tool IndexFeatureFile该怎么处理呀
vcf文件没有建立索引,你需要建立一下:
gatk --java-options "-Xmx50g" IndexFeatureFile -I data.vcf.gz
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