不会配置mysql就使用sqlite数据库吧;
请问老师我在运行pasa组装转录本的时候遇到如下报错,应该怎么解决?我的mysql数据库是配置好的
-connecting to MySQL db: Specie_name_pasa
-*** Running PASA pipeine:
* [Wed May 15 16:19:38 2024] Running CMD: /share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/scripts/create_mysql_cdnaassembly_db.dbi -c alignAssembly.config -S '/share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/schema/cdna_alignment_mysqlschema' -r
host=mysql--
DBI connect('database=;host=mysql','pasa_write',...) failed: Can't connect to MySQL server on 'mysql' (111) at /share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/PerlLib/DB_connect.pm line 74.
Cannot connect to : Can't connect to MySQL server on 'mysql' (111) at /share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/scripts/create_mysql_cdnaassembly_db.dbi line 58.
Error, cmd: /share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/scripts/create_mysql_cdnaassembly_db.dbi -c alignAssembly.config -S '/share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/schema/cdna_alignment_mysqlschema' -r died with ret 65280 No such file or directory at /share/work/biosoft/PASApipeline/PASApipeline-v2.5.2/PerlLib/Pipeliner.pm line 187.
Pipeliner::run(Pipeliner=HASH(0x15ab9b8)) called at /share/work/biosoft/PASApipeline/latest/Launch_PASA_pipeline.pl line 1047