报错：A USER ERROR has occurred: Traversal by intervals was requested but some input files are not indexed.
Please index all input files:
samtools index SRR3274663.new.sorted.bam
Set the system property GATK_STACKTRACE_ON_USER_EXCEPTION (--java-options '-DGATK_STACKTRACE_ON_USER_EXCEPTION=true') to print the stack trace.
这是我的命令：gatk --java-options "-Xmx20g -Djava.io.tmpdir=./tmp" HaplotypeCaller -R genome.fasta -l SRR3274663.new.sorted.bam -ERC GVCF -O SRR3274663.g.vcf 1>663.log 2>&1
在这里我已经对基因组文件建了索引，这里是还要对输入的bam文件做索引嘛；
但我尝试用
samtools index SRR3274663.new.sorted.bam此命令对输入文件做索引也不成功
