代码是昨天那个
cat ../id.txt|while read ind;do
/share/work/biosoft/TransDecoder/latest/util/gff3_file_to_proteins.pl --gff3 ./${ind}.longest_isoform.gff3 --fasta ./${ind}.fa.gz --seqType CDS >./${ind}.cds.fa
/share/work/biosoft/TransDecoder/latest/util/gff3_file_to_proteins.pl --gff3 ./${ind}.longest_isoform.gff3 --fasta ./${ind}.fa.gz --seqType prot >./${ind}.pep.fa