NOTICE: Running with system command <coding_change.pl snp.refGene.exonic_variant_function.orig /data/SNPINDEL/unknown_refGene.txt /data/SNPINDEL/unknown_refGeneMrna.fa -alltranscript -out snp.refGene.fa -newevf snp.refGene.exonic_variant_function>
Error: invalid notation found: <gene-Pdu00001:rna-Pdu00001.1:exon4:c.G343C:p.A115P> at /data/annovar/coding_change.pl line 617, <EVF> line 1.
Error running system command: <coding_change.pl snp.refGene.exonic_variant_function.orig /data/SNPINDEL/unknown_refGene.txt /data/SNPINDEL/unknown_refGeneMrna.fa -alltranscript -out snp.refGene.fa -newevf snp.refGene.exonic_variant_function>
Error running system command: </data/annovar/table_annovar.pl snp.avinput /data/SNPINDEL -buildver unknown -outfile snp -remove -protocol refGene -operation g -nastring . -otherinfo>
indel注释没有报错,正常运行.