[root@c4bf00d21ba0 09:33:02 /work]# cd 01.cotton_data_prepare
[root@c4bf00d21ba0 09:33:29 /work/01.cotton_data_prepare]# ll
total 1.8G
-rw-r--r-- 1 root root 23M Dec 20 15:55 AD4_JGI.annotation.gff3.gz
-rw-r--r-- 1 root root 1.3G Dec 20 15:55 AD4_JGI.genome.fa.gz
-rw-r--r-- 1 root root 466M Dec 20 16:48 AD4.longest_isoform.gff3
[root@c4bf00d21ba0 09:45:29 /work/01.cotton_data_prepare]# /share/work/biosoft/TransDecoder/latest/util/gff3_file_to_proteins.pl --gff3 ./${ind}.AD4.longest_isoform.gff3 --fasta ./${ind}AD4_JGI.genome.fa.gz --seqType CDS >./${ind}.cds.fa
Killed
